30-9-2025 –, Erik de Vries
Smart microscopy uses real-time data and automation to make microscopes more intelligent and responsive. Instead of relying on fixed settings, the system adapts on the fly - changing parameters like resolution, zoom level, frame rate, and focus, based on the sample and what is being observed. This not only improves image quality but also reduces the need for manual intervention, making experiments more efficient and scalable.
At the Cellular Disease Models Lab, we work with organoids—miniaturised, lab-grown versions of human organs used to study diseases and test treatments. These experiments generate large volumes of high-resolution image data, which presents major challenges in storage, processing, and analysis. To address this, we are developing an automated workflow that connects the microscope to a cloud-based system. Using tools like Azure and Databricks, image data is stored, analysed using AI models, and then used to make decisions in real time - such as automatically refocusing the microscope on areas of interest.
This approach shows how cloud technologies, microservices, and AI can be used to automate and coordinate complex lab equipment. By integrating real-time feedback and orchestration, we are transforming the microscope from a passive tool into an active participant in the research process.
Sam van Beuningen is an Assistant Professor and leads a research team in AI and Automation for Cellular Disease models within the Department of Cellular Disease Models (UMC Utrecht) and the Regenerative Medicine Center Utrecht. He has an educational background in molecular biology and holds a PhD in cell biology from Utrecht University. During his PhD project, he gained extensive experience in various molecular biology and advanced microscopy techniques at the Department of Cell Biology (Utrecht University). After obtaining his PhD, Sam continued his career as a Data Science consultant for various large Dutch enterprises. Here he developed various data and machine-learning solutions to improve business processes. Since 2021 he is working within the Centre for Living Technologies where he combines his molecular biology and microscopy knowledge with his data science experience. Sam and his team run the Cellular Screening Technologies facility and the AI lab for Living Technologies where they develop automated lab and AI pipelines for the screening and analysis of patient derived technologies.